Arli Aditya Parikesit - Screening of commercial cyclic peptide as inhibitor  NS5 methyltransferase of Dengue virus through  Molecular Docking and Molecular Dynamics  Simulation

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      Publication Details (including relevant citation   information):

      Tambunan, Usman Sumo Friend, Zahroh, Hilyatuz, Utomo, Bimo Budi,   Parikesit, Arli Aditya, Bioinformation,   2014, 10 (1), pp 23-27

      Abstract:

    Dengue has become a major global health threat, especially in tropical and subtropical regions. The development of antiviral agent targeting viral replication is really needed at this time. NS5 methyltransferase presents as a novel antiviral target. This enzyme plays an important role in the methylation of 5’-cap mRNA. Inhibition of the NS5 methyltransferase could inhibit dengue virus replication. In this research, two sites of NS5 methyltransferase (S-Adenosyl methionine/SAM binding site and RNA-cap site) were used as targets for inhibition. As much as 300 commercial cyclic peptides were screened to these target sites by means of molecular docking. Analysis of ligand-enzyme binding free energy and pharmacological prediction revealed two best ligands, namely [Tyr123] Prepro Endothelin (110-130), amide, human and Urotensin II, human. According to molecular dynamic simulation, both ligands maintain a stable complex conformation between enzyme and ligand at temperature 310 K and 312 K. Hence, Urotensin II, human is more reactive at 312 K than at 310 K. However, both ligands can be used as potential inhibitor candidates against NS5 methyltransferase of dengue virus with Urotensin II, human exposes more promising activity at 312 K.

      Address (URL): http://bioinformation.net/010/97320630010023.pdf